Command: FastTreeMP -wag -nome -mllen -intree ar53_r220_stripped.tree -log fitting_ar53/fitting_stats.log
FastTree Version 2.1.11 Double precision (No SSE3), OpenMP (40 threads)
Alignment: standard input
Amino acid distances: BLOSUM45 Joins: balanced Support: SH-like 1000
Start at tree from ar53_r220_stripped.tree (no NNI) (no SPR)
ML Model: Whelan-And-Goldman, CAT approximation with 20 rate categories
Read 5869 sequences, 10101 positions
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CA_016219465.1:0.145582776):0.106013337,GB_GCA_016187395.1:0.268822192):0.032905927):0.011568187,((GB_GCA_016219485.1:0.223270947,GB_GCA_018304635.1:0.252532359):0.022398813,GB_GCA_002688965.1:0.307897802):0.005656592):0.028707450,(((GB_GCA_021163205.1:0.071690588,GB_GCA_029932645.1:0.087115406):0.105175876,GB_GCA_021157845.1:0.210186018):0.058508429,(GB_GCA_015522745.1:0.046469376,GB_GCA_015523085.1:0.010702711):0.247188392):0.010447222):0.003668251,(GB_GCA_018920315.1:0.244308971,GB_GCA_021158665.1:0.210105153):0.063044275):0.044739944,(((((((GB_GCA_003663295.1:0.029343804,GB_GCA_030600555.1:0.024711175):-0.001499104,GB_GCA_030614705.1:0.021031257):0.003186581,GB_GCA_023134135.1:0.025570805):0.136195121,(((GB_GCA_023659935.1:0.014024940,GB_GCA_023659975.1:0.016766089):0.086855489,GB_GCA_021163805.1:0.072828749):0.013750190,GB_GCA_003663355.1:0.090484245):0.015185995):0.007781368,GB_GCA_030620695.1:0.149406324):0.034219209,GB_GCA_023659895.1:0.201507683):0.020149731,GB_GCA_016932615.1:0.232654829):0.205117901):0.014984666):0.009482840,(((((((((((GB_GCA_017610525.1:0.020872803,GB_GCA_030635525.1:0.023750797):0.007059579,GB_GCA_003660865.1:0.031639321):0.006627421,GB_GCA_030634545.1:0.046326446):0.052936200,GB_GCA_030594795.1:0.086032075):0.134157140,(GB_GCA_017610545.1:0.009898540,GB_GCA_023139785.1:0.021743411):0.235120469):0.007682823,(((GB_GCA_023142905.1:0.019083811,GB_GCA_030594585.1:0.018498566):0.016703422,GB_GCA_030630425.1:0.013429328):0.072886026,GB_GCA_013139905.1:0.114068738):0.125423761):0.007856195,(GB_GCA_018897155.1:0.081394431,GB_GCA_902384675.1:0.070712724):0.186143958):0.027357548,(((GB_GCA_003660905.1:0.101718385,GB_GCA_023137195.1:0.102208377):0.000551893,GB_GCA_030632385.1:0.146996504):0.069312815,GB_GCA_002254415.1:0.153993776):0.261188053):-0.003709760,(((((((GB_GCA_030636885.1:0.022243808,GB_GCA_030671745.1:0.016748327):0.019417200,GB_GCA_019429125.1:0.051403865):0.013229960,GB_GCA_013138765.1:0.046487078):0.049464988,((GB_GCA_013138805.1:0.017999045,GB_GCA_023134675.1:0.014157702):0.071817963,GB_GCA_030594675.1:0.112767040):0.003554941):0.135502176,GB_GCA_019429005.1:0.261746663):0.013237651,GB_GCA_030636615.1:0.298771259):0.028259871,GB_GCA_030631505.1:0.249576628):0.023207225):0.020957065,((((GB_GCA_015520895.1:0.026654813,GB_GCA_026997215.1:0.007335858):0.063357369,GB_GCA_013153555.1:0.079039988):0.095713491,GB_GCA_027076285.1:0.187069041):0.134449079,((GB_GCA_015520605.1:0.020622625,GB_GCA_027038505.1:0.016222268):0.063828536,GB_GCA_029258795.1:0.076489501):0.173881346):0.021927273):0.043772243,(((((((((GB_GCA_000220375.1:0.093567371,GB_GCA_937132175.1:0.126725837):0.011696013,GB_GCA_022729355.1:0.105495646):0.045043883,(GB_GCA_013343275.1:0.033590665,GB_GCA_029232205.1:0.035485869):0.089207501):0.001910812,(((GB_GCA_001563915.1:0.045394849,GB_GCA_001564035.1:0.033696179):0.063393918,GB_GCA_001564145.1:0.081676297):0.069626678,(GB_GCA_001761425.1:0.123655777,RS_GCF_009617975.1:0.121630453):0.007778380):0.005162998):0.011266452,(GB_GCA_022729235.1:0.124641804,GB_GCA_029207735.1:0.156214912):0.011501665):-0.006217615,(((GB_GCA_001563995.1:0.114294687,GB_GCA_014297435.1:0.096432003):0.012105838,(GB_GCA_003009795.1:0.025313174,GB_GCA_003009815.1:0.017736498):0.109526335):0.007193349,(GB_GCA_001563875.1:0.068246623,GB_GCA_001563905.1:0.050038473):0.059601040):0.023095474):0.025481016,GB_GCA_000220355.1:0.228900828):0.114333596,((((((GB_GCA_022729255.1:0.016841181,GB_GCA_022729275.1:0.023297071):0.045129958,GB_GCA_022729335.1:0.066518224):0.025374540,GB_GCA_022729285.1:0.097359937):0.083651168,GB_GCA_022865275.1:0.162209892):0.007742781,GB_GCA_022865265.1:0.153223757):0.035754056,(GB_GCA_022729315.1:0.179405269,GB_GCA_022865215.1:0.160623614):0.046015451):0.027936767):0.059228506,(GB_GCA_017610385.1:0.299945810,GB_GCA_018609855.1:0.343645657):-0.003863229):0.088462146):0.017999880):0.020194735,GB_GCA_002789275.1:0.614759778):0.007854399):0.022543958,(((((((GB_GCA_018220935.1:0.141153646,GB_GCA_018221025.1:0.114805857):0.038455568,GB_GCA_030590165.1:0.190330191):0.017512108,GB_GCA_015522095.1:0.169178552):0.047944010,(GB_GCA_011049195.1:0.179672208,GB_GCA_018221005.1:0.150581994):0.095203392):0.013976017,GB_GCA_018220955.1:0.221114247):0.123460992,(GB_GCA_020723935.1:0.264131175,GB_GCA_030622515.1:0.239162807):0.086122253):0.030570661,GB_GCA_030753015.1:0.327629922):0.039326281):0.012420240);
Total branch-length 533.664 after 23.00 sec
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TreeLogLk	Length1	-29474268.3610	MaxChange	0.2551
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TreeLogLk	Length2	-28049054.4594	MaxChange	0.2523
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TreeLogLk	Length3	-28049038.0090	MaxChange	0.0071
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TreeLogLk	Length4	-28049037.8628	MaxChange	0.0012
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TreeLogLk	Length5	-28049037.8553	MaxChange	0.0003
Total time: 3902.12 seconds Unique: 5869/5869 Bad splits: 109/5866 Worst delta-LogLk 35.723
Dist/N**2: by-profile 0.002 (out 0.000) by-leaf 0.000 avg-prof 0.001
 Hill-climb: 0 Update-best: 0
TreeCompleted